Πέμπτη 30 Νοεμβρίου 2017

Riboflavin transporter deficiency mimicking mitochondrial myopathy caused by complex II deficiency

Biallelic likely pathogenic variants in SLC52A2 and SLC52A3 cause riboflavin transporter deficiency. It is characterized by muscle weakness, ataxia, progressive ponto-bulbar palsy, amyotrophy, and sensorineural hearing loss. Oral riboflavin halts disease progression and may reverse symptoms. We report two new patients whose clinical and biochemical features were mimicking mitochondrial myopathy. Patient 1 is an 8-year-old male with global developmental delay, axial and appendicular hypotonia, ataxia, and sensorineural hearing loss. His muscle biopsy showed complex II deficiency and ragged red fibers consistent with mitochondrial myopathy. Whole exome sequencing revealed a homozygous likely pathogenic variant in SLC52A2 (c.917G>A; p.Gly306Glu). Patient 2 is a 14-month-old boy with global developmental delay, respiratory insufficiency requiring ventilator support within the first year of life. His muscle biopsy revealed combined complex II + III deficiency and ragged red fibers consistent with mitochondrial myopathy. Whole exome sequencing identified a homozygous likely pathogenic variant in SCL52A3 (c.1223G>A; p.Gly408Asp). We report two new patients with riboflavin transporter deficiency, caused by mutations in two different riboflavin transporter genes. Both patients presented with complex II deficiency. This treatable neurometabolic disorder can mimic mitochondrial myopathy. In patients with complex II deficiency, riboflavin transporter deficiency should be included in the differential diagnosis to allow early treatment and improve neurodevelopmental outcome.



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Τετάρτη 29 Νοεμβρίου 2017

Relevance of genetic relationship in GWAS and genomic prediction

Abstract

The objective of this study was to analyze the relevance of relationship information on the identification of low heritability quantitative trait loci (QTLs) from a genome-wide association study (GWAS) and on the genomic prediction of complex traits in human, animal and cross-pollinating populations. The simulation-based data sets included 50 samples of 1000 individuals of seven populations derived from a common population with linkage disequilibrium. The populations had non-inbred and inbred progeny structure (50 to 200) with varying number of members (5 to 20). The individuals were genotyped for 10,000 single nucleotide polymorphisms (SNPs) and phenotyped for a quantitative trait controlled by 10 QTLs and 90 minor genes showing dominance. The SNP density was 0.1 cM and the narrow sense heritability was 25%. The QTL heritabilities ranged from 1.1 to 2.9%. We applied mixed model approaches for both GWAS and genomic prediction using pedigree-based and genomic relationship matrices. For GWAS, the observed false discovery rate was kept below the significance level of 5%, the power of detection for the low heritability QTLs ranged from 14 to 50%, and the average bias between significant SNPs and a QTL ranged from less than 0.01 to 0.23 cM. The QTL detection power was consistently higher using genomic relationship matrix. Regardless of population and training set size, genomic prediction provided higher prediction accuracy of complex trait when compared to pedigree-based prediction. The accuracy of genomic prediction when there is relatedness between individuals in the training set and the reference population is much higher than the value for unrelated individuals.



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Exercise Alters Gut Microbiota Composition and Function in Lean and Obese Humans

PURPOSE Exercise is associated with altered gut microbial composition, but studies have not investigated whether the gut microbiota and associated metabolites are modulated by exercise training in humans. We explored the impact of six weeks of endurance exercise on the composition, functional capacity, and metabolic output of the gut microbiota in lean and obese adults with multiple-day dietary controls prior to outcome variable collection. METHODS Thirty-two lean (n=18 [9 female]) and obese (n=14 [11 female]), previously sedentary subjects participated in six weeks of supervised, endurance-based exercise training (3 days/wk) that progressed from 30 to 60 minutes/day and from moderate (60% of heart rate reserve [HRR]) to vigorous intensity (75% HRR). Subsequently, participants subsequently returned to a sedentary lifestyle activity for a six week washout period. Fecal samples were collected before and after six weeks of exercise, as well as after the sedentary washout period, with 3-day dietary controls in place prior to each collection. RESULTS β-diversity analysis revealed that exercise-induced alterations of the gut microbiota were dependent on obesity status. Exercise increased fecal concentrations of short chain fatty acids (SCFAs) in lean, but not obese, participants. Exercise-induced shifts in metabolic output of the microbiota paralleled changes in bacterial genes and taxa capable of SCFA production. Lastly, exercise-induced changes in the microbiota were largely reversed once exercise training ceased. CONCLUSION These findings suggest that exercise training induces compositional and functional changes in the human gut microbiota that are dependent on obesity status, independent of diet and contingent on the sustainment of exercise. Corresponding Author: Jeffrey A. Woods, PhD, 906 S. Goodwin Ave., 348 Louise Freer Hall, University of Illinois at Urbana-Champaign, Urbana IL 61801, Woods1@illinois.edu, 217-244-8815 This work was partially funded by a doctoral student research grant from the American College of Sports Medicine (ACSM). Authors have no professional relationships with companies or manufacturers who will benefit from the results of the present study. Results of the present study do not constitute endorsement by ACSM. Results of the study are presented clearly, honestly and without fabrication, falsification, or inappropriate data manipulation. Accepted for Publication: 6 November 2017 © 2017 American College of Sports Medicine

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Adipose Lipolysis Unchanged by Preexercise Carbohydrate regardless of Glycemic Index

ABSTRACT PURPOSE To determine the impact of pre-exercise carbohydrate of different glycemic indices on subcutaneous abdominal adipose tissue (SCAAT) metabolism and running performance. METHODS Ten trained male runners completed three experimental trials consisting of 30 min at 60% VO2max, 30 min at 75% VO2max, and a 5-km time trial (TT). Thirty min prior to exercise, participants consumed one of three beverages: 1) 75 g low glycemic index modified starch supplement (UCAN), 2) 75 g high glycemic index glucose-based supplement (G), or 3) a flavor-matched non-caloric placebo (PL). SCAAT lipolysis was assessed via microdialysis. RESULTS Prior to exercise, blood glucose and insulin were elevated with G vs. PL (+53.0 ± 21.3 mg[BULLET OPERATOR]dL-1 [SD]; p

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Biological/Genetic Regulation of Physical Activity Level: Consensus from GenBioPAC

ABSTRACT PURPOSE Physical activity unquestionably maintains and improves health; however, physical activity levels globally are low and not rising despite all the resources devoted to this goal. Attention in both the research literature and the public policy domain has focused on social-behavioral factors; however, a growing body of literature suggests that biological determinants play a significant role in regulating physical activity levels. For instance, physical activity level, measured in various manners, has a genetic component in both humans and non-human animal models. This consensus paper, developed as a result of an ACSM-sponsored round table, provides a brief review of the theoretical concepts and existing literature that supports a significant role of genetic and other biological factors in the regulation of physical activity. CONCLUSION Future research on physical activity regulation should incorporate genetics and other biological determinants of physical activity instead of a sole reliance on social and other environmental determinants. Corresponding Author: J. Timothy Lightfoot, Department of Health and Kinesiology, Texas A&M University, College Station, TX, TLightfoot@tamu.edu The results of the present study are presented clearly, honestly, and without fabrication, falsification, or inappropriate data manipulation. Funding: The authors would like to thank the organizations that provided supporting funds for this Roundtable: The American College of Sports Medicine, The Texas A&M Vice-President of Research office, the Texas A&M Institute for Genome Sciences and Society, The Sydney and JL Huffines Institute of Sports Medicine and Human Performance, and the Omar Smith Endowment. T.G. is supported by NIH/NICHD R21HD084856 and NSF DEB-1655362. M.dH. is supported by project grants from the Swedish Research Council (2015-03657), the Swedish Heart-Lung Foundation (20140543), and NIH (R01DK106236). J.K. is an Academy of Finland funded Research Professor (grants #265240, 263278). Conflict of Interest: The authors report no conflict of interest. The results of the present study do not constitute endorsement by the American College of Sports Medicine. Accepted for Publication: 14 November 2017 © 2017 American College of Sports Medicine

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Strength, Affect Regulation, and Subcortical Morphology in Military Pilots

Introduction Previous studies have shown links of body composition and fitness measures with brain structure, as well as with different aspects of emotional adjustment and well-being. However, the possible role of trait emotion-regulation success in the relationship between fitness/body composition and emotion-related subcortical structures have never been directly addressed Methods 23 elite helicopter pilots were assessed in fat mass percentage, an endurance test to volitional exhaustion, bench-press power output, and negative urgency (trait affect regulation failure). Their brains were scanned using magnetic resonance imaging (MRI) to estimate the size of the accumbens/amygdala complex and the thalamus. Resulting correlations were used to test the relationship between body composition/fitness measures and brain structures' size, and the role of negative urgency therein, using structural equation modelling. Results Fat mass percentage was associated with the size of the thalamus and the amygdala/accumbens complex. In the latter case, negative urgency and bench-press power output predicted structure size (and explained the effect of fat mass percentage away). In other words, bench-press power output and emotion regulation success (but not endurance performance) were associated with a larger amygdala-accumbens size. Conclusion Bench-press power output and emotion regulation success are independently associated with a larger amygdala-accumbens size, although present evidence does not allow determination of causal directionality. Corresponding author: David Cárdenas, Department of Physical Education and Sport, Faculty of Sport Sciences, University of Granada, Carretera de Alfacar s/n, 18011 Granada, Spain. Tel: +34 958244375. Fax: +34 958244369. E-mail: dcardena@ugr.es Research by the first author is funded by a Spanish Ministry of Economy and Competitiveness grant (State Secretariat for Research, Development and Innovation Secretary DEP2013-48211-R), and grant PIN 11 from CEMIX (Centro Mixto UGR-MADOC, Spain). Research by the fourth author is supported by the Spanish Government (Ministerio de Economía y Competitividad, Secretaría de Estado de Invetigación, Desarrollo e Innovación; Convocatoria 2013 de Proyectos I+D de Excelencia), under grant with reference number PSI2013-45055-P (G-Brain). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. The results of the study are presented clearly, honestly, and without fabrication, falsification, or inappropriate data manipulation. No conflicting financial, consultant, institutional, or other interests exist. Results of the present study do not constitute endorsement by the American College of Sports Medicine. Accepted for Publication: 12 November 2017 © 2017 American College of Sports Medicine

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Cardiometabolic Impact of Changing Sitting, Standing, and Stepping in the Workplace

ABSTRACT Background According to cross-sectional and acute experimental evidence, reducing sitting time should improve cardio-metabolic health risk biomarkers. Furthermore, the improvements obtained may depend on whether sitting is replaced with standing or ambulatory activities. Based on data from the Stand Up Victoria multi-component workplace intervention, we examined this issue using compositional data analysis — a method that can examine and compare all activity changes simultaneously. Methods Participants receiving the intervention (n=136 ≥0.6 full-time equivalent desk-based workers, 65% women, mean±SD age=44.6 ±9.1 years from seven worksites) were asked to improve whole-of-day activity by standing up, sitting less and moving more. Their changes in the composition of daily waking hours (activPAL-assessed sitting, standing, stepping) were quantified, then tested for associations with concurrent changes in cardio-metabolic risk (CMR) scores and 14 biomarkers concerning body composition, glucose, insulin and lipid metabolism. Analyses were by mixed models, accounting for clustering (3 months, n=105–120; 12 months, n=80–97). Results Sitting reduction was significantly (p

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